5/18/2023 0 Comments Cannot open the connection rstudio'help.start()' for an HTML browser interface to help. Type 'demo()' for some demos, 'help()' for on-line help, or 'citation()' on how to cite R or R packages in publications. Type 'contributors()' for more information and R is a collaborative project with many contributors. Type 'license()' or 'licence()' for distribution details. ![]() You are welcome to redistribute it under certain conditions. R is free software and comes with ABSOLUTELY NO WARRANTY. If not, you'll be hearing more from me soon! Thanks so much for all your help.įor reference, here is my console so far: R version 3.2.2 () - "Fire Safety"Ĭopyright (C) 2015 The R Foundation for Statistical Computing ![]() I'll check my qiime version later (I didn't use this computer) and see if I can fix it as suggested in that thread. I found another thread that suggests that this may be due to newer versions of qiime producing biom files in a different format which is not read correctly into phyloseq. Yes, I have been getting the same JSON error. Loaded via a namespace (and not attached): stats graphics grDevices utils datasets methods base LC_NUMERIC=C LC_TIME=English_New Zealand.1252 LC_COLLATE=English_New Zealand.1252 LC_CTYPE=English_New Zealand.1252 LC_MONETARY=English_New Zealand.1252 However, when I corrected it I still got an error: > biom_otu_tax sessionInfo() I feel like such an idiot, I got the file path wrong - missed a "/".
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